PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g081120.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 981aa MW: 108528 Da PI: 4.6419

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g081120.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.6	1.4e-20	231	286	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Csa20g081120.1 231 KKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMK 286 688999***********************************************998 PP
2	START	146.1	3.4e-46	441	674	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla 77 e+a ++ qel k+ +aeep+W k +n++e+++ f+ + ea++a vv+m++ +lv +l+ +W+e++ Csa20g081120.1 441 EIAVSCVQELTKMCDAEEPLWIKKKsdkisgeiLCLNEEEYMRLFP---WpvenhnnkadFAREASKANSVVIMNSITLVDAFLNAD-KWSEMFC 531 578899*************9999777776554456666666664...033556699999**********************.**9 PP ....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--..-TTSEE-EESSEEEEEEEEC CS START 78 ....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppe.sssvvRaellpSgiliepks 158 +a+t++ issg g l lm+ae+q+lsplvp R+ +f+Ry +q + g w+ivd +d ++q++p + s ++ pSg++i++++ Csa20g081120.1 532 sivaRAKTVQIISSGvsgasGSLLLMYAEFQVLSPLVPtREAYFLRYVEQnAENGNWAIVDFPIDsfHDQMQPPsTNSPHEYKRKPSGCIIQDMP 626 9999******************************************99*****99883334444444666667779******* PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng+s+v wvehv+++++++h+ + vksg+a+ga++w+ lqrqce+ Csa20g081120.1 627 NGYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCER 674 ********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-20	220	289	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-21	225	295	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	228	288	IPR001356	Homeobox domain
SMART	SM00389	1.4E-18	229	292	IPR001356	Homeobox domain
CDD	cd00086	2.04E-19	231	289	No hit	No description
Pfam	PF00046	4.4E-18	231	286	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	263	286	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.887	432	677	IPR002913	START domain
SuperFamily	SSF55961	1.37E-30	434	676	No hit	No description
CDD	cd08875	6.81E-107	436	673	No hit	No description
SMART	SM00234	2.6E-26	441	674	IPR002913	START domain
Pfam	PF01852	1.3E-38	442	674	IPR002913	START domain
SuperFamily	SSF55961	6.73E-10	701	849	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MLSIGEGNVM TSDNMRFASQ QPSSSSPGTI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM 60 MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNL 120 MLSIGEGNVM TSDNMRFASQ QPSSSSPGTI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM 180 MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNR 240 QIQEMEALFK ENPHPDDKQR KRLSAELGLK PRQVKFWFQN RRTQMKAQQD RTENAMLRAE 300 NANLKSENCH LQGELRCLSC PSCGGPTVLG DIPFNELHIE NCRLREELDR ICCITSRYTG 360 RPMQSMPSSQ PLIDPSSTLP HHQPSLELDM SVYAGNFPEH SCADMMMLPS QDTTCFFPDQ 420 TVNNNNNNML LAEEEKVIAM EIAVSCVQEL TKMCDAEEPL WIKKKSDKIS GEILCLNEEE 480 YMRLFPWPVE NHNNKADFAR EASKANSVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV 540 QIISSGVSGA SGSLLLMYAE FQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD 600 QMQPPSTNSP HEYKRKPSGC IIQDMPNGYS QVKWVEHVEV DEKHVHETFA EYVKSGMAFG 660 ANRWLDVLQR QCERIASLMA RNITDLGGYD IISRSEEKHD EVITEDDTVR ITTRKMCEPG 720 QPTGVLLSAV STTWLPFTHH QVFDLIRDQH HQSLLEVLFN GNSPHEVAHI ANGSHPGNCI 780 SLLRINVASN SWHNVELMLQ ESSIDNSGSL IVYSTVDVDS IQLAMNGEDS SNIPILPLGF 840 SIVPVASNSW HNVELMLQES SIDNSGSLIV YSTVDVDSIQ LAMNGEDSSN IPILPLGFSI 900 VPVNPPEGIS VNSNSPPSCL LTVAIQVLAS NVPTAKPNLS TVTTINNHLC ATVNQITSAL 960 TSSVTPAIAS SAAVSKQEAS *

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MLSIGEGNVM TSDNMRFASQ QPSSSSPGTI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM  60
MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNL  120
MLSIGEGNVM TSDNMRFASQ QPSSSSPGTI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM  180
MGDGTVEEMM ENGSAGGSFG SGSEQAEDPK FGNESDVNEL QDDEQPPPAK KKRYHRHTNR  240
QIQEMEALFK ENPHPDDKQR KRLSAELGLK PRQVKFWFQN RRTQMKAQQD RTENAMLRAE  300
NANLKSENCH LQGELRCLSC PSCGGPTVLG DIPFNELHIE NCRLREELDR ICCITSRYTG  360
RPMQSMPSSQ PLIDPSSTLP HHQPSLELDM SVYAGNFPEH SCADMMMLPS QDTTCFFPDQ  420
TVNNNNNNML LAEEEKVIAM EIAVSCVQEL TKMCDAEEPL WIKKKSDKIS GEILCLNEEE  480
YMRLFPWPVE NHNNKADFAR EASKANSVVI MNSITLVDAF LNADKWSEMF CSIVARAKTV  540
QIISSGVSGA SGSLLLMYAE FQVLSPLVPT REAYFLRYVE QNAENGNWAI VDFPIDSFHD  600
QMQPPSTNSP HEYKRKPSGC IIQDMPNGYS QVKWVEHVEV DEKHVHETFA EYVKSGMAFG  660
ANRWLDVLQR QCERIASLMA RNITDLGGYD IISRSEEKHD EVITEDDTVR ITTRKMCEPG  720
QPTGVLLSAV STTWLPFTHH QVFDLIRDQH HQSLLEVLFN GNSPHEVAHI ANGSHPGNCI  780
SLLRINVASN SWHNVELMLQ ESSIDNSGSL IVYSTVDVDS IQLAMNGEDS SNIPILPLGF  840
SIVPVASNSW HNVELMLQES SIDNSGSLIV YSTVDVDSIQ LAMNGEDSSN IPILPLGFSI  900
VPVNPPEGIS VNSNSPPSCL LTVAIQVLAS NVPTAKPNLS TVTTINNHLC ATVNQITSAL  960
TSSVTPAIAS SAAVSKQEAS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	261	DKQRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g081120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	0.0	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494885.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X1
Refseq	XP_010494886.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X2
Refseq	XP_010494890.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X3
Refseq	XP_010494891.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X4
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	R0GUB6	0.0	R0GUB6_9BRAS; Uncharacterized protein
STRING	XP_010494886.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]