PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g082150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 306aa    MW: 35267.1 Da    PI: 9.952
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g082150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.4e-26209292186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi  r+++e++   +  k+  W+e+s++m+erg+ rs+k+Ckekwen+nk+y+++ eg +k+ +e+s+t +yf++l 
  Csa20g082150.1 209 RWPQEEVQALISTRSDVEDKAVMN-NKGSIWDEISARMKERGYDRSAKKCKEKWENMNKYYRRVMEGGRKQ-PEHSKTRSYFEKLA 292
                     8*****************997765.89******************************************95.9**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0069206267IPR001005SANT/Myb domain
PfamPF138373.2E-20208293No hitNo description
Gene3DG3DSA:1.10.10.603.1E-5208265IPR009057Homeodomain-like
PROSITE profilePS500907.596209265IPR017877Myb-like domain
CDDcd122038.50E-21210271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGFGCFEAPL GSKIADVGQS GQLTRGIPKG DVAPLPLHLQ FQARNRLSWD GVSLGSSVDS  60
DSDSSPDVRK TVAGKRKRET KVNLEQFLEK LVGSMMKRQE KMHNQLIKVM EKMEGERIRR  120
EEAWRQQEIE RMQQNEEARK QEIARSLSII TFIKSVIGDE IEIPKPSVFP QPLQQILPEQ  180
CEDKKCVSAR TQREIKFRYS RGGSSSGRRW PQEEVQALIS TRSDVEDKAV MNNKGSIWDE  240
ISARMKERGY DRSAKKCKEK WENMNKYYRR VMEGGRKQPE HSKTRSYFEK LADLYKTNFS  300
GEREE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g082150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256280.0AB025628.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495821.20.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLD7MP231e-168D7MP23_ARALL; Predicted protein
STRINGXP_010495821.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-150Trihelix family protein