PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa21393s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 88aa    MW: 9846.73 Da    PI: 8.4531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa21393s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.71.3e-195987230
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa 30
                    dDgynWrKYGqK+vkgsefprsYY+Cts+
  Csa21393s010.1 59 DDGYNWRKYGQKQVKGSEFPRSYYKCTSQ 87
                    8**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-175288IPR003657WRKY domain
SuperFamilySSF1182901.57E-155687IPR003657WRKY domain
SMARTSM007741.4E-75888IPR003657WRKY domain
PROSITE profilePS5081117.665988IPR003657WRKY domain
PfamPF031063.2E-145987IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MQPQTEYPPS SQVQSFSSGQ AQVPTSAPHS SVPAQRETSD VTIIEHRSQQ PLNVDKPADD  60
GYNWRKYGQK QVKGSEFPRS YYKCTSQG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa21393s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0075765e-85AC007576.3 Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete sequence.
GenBankAC0681975e-85AC068197.4 Genomic sequence for Arabidopsis thaliana BAC F16A14 from chromosome I, complete sequence.
GenBankAF2247035e-85AF224703.1 Arabidopsis thaliana WRKY DNA-binding protein 4 (WRKY4) mRNA, complete cds.
GenBankAF4258355e-85AF425835.1 Arabidopsis thaliana WRKY transcription factor 4 (WRKY4) mRNA, complete cds.
GenBankAY0456765e-85AY045676.1 Arabidopsis thaliana At1g13960/F7A19_5 mRNA, complete cds.
GenBankBT0026295e-85BT002629.1 Arabidopsis thaliana At1g13960/F7A19_5 gene, complete cds.
GenBankCP0026845e-85CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476427.17e-56PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI902e-49WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLR0GLP16e-50R0GLP1_9BRAS; Uncharacterized protein
STRINGXP_010476427.13e-55(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.26e-52WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]