PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa22131s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 66aa MW: 7260.6 Da PI: 10.4825

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa22131s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.3	6.1e-20	20	65	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l Csa22131s010.1 20 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKML 65 7*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.568	19	66	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-19	20	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MAGIRRPMSG PPGTLNTITP CAACKLLRRR CAQECPFSPY FSPHEPHKFA SVHKVFGASN 60 VSKMLM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-18	12	65	3	56	LOB family transfactor Ramosa2.1
5ly0_B	2e-18	12	65	3	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa22131s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254595	3e-92	AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001324899.1	1e-42	LOB domain-containing protein 15
Refseq	NP_565933.1	2e-42	LOB domain-containing protein 15
Refseq	XP_009133436.1	2e-42	PREDICTED: LOB domain-containing protein 15 isoform X1
Refseq	XP_013734516.1	2e-42	LOB domain-containing protein 15
Refseq	XP_020882787.1	1e-42	LOB domain-containing protein 15 isoform X2
Swissprot	Q8L5T5	2e-43	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M4C7L0	2e-41	M4C7L0_BRARP; Uncharacterized protein
STRING	Bra000188.1-P	3e-42	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-46	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]