PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa22301s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 86aa    MW: 9554.66 Da    PI: 7.8484
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa22301s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26.1e-081536426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    + C+f+   G C+yGd+C++ H+
  Csa22301s010.1 15 KVCNFWVD-GNCSYGDKCRYLHC 36
                    68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-71135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3331138IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-51337IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-51436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-61533IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.41E-73285IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.8E-83486IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.2E-54281IPR001680WD40 repeat
PROSITE profilePS5029412.9474986IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.0514986IPR001680WD40 repeat
PROSITE patternPS0067806882IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
WGRFGGNRTV TKTEKVCNFW VDGNCSYGDK CRYLHCWSKG DSFSLLTQLD GHEKLVSGIA  60
LPSGSDKLYT GSKDESLRVW DCASGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa22301s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154781e-116AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAJ2520641e-116AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
GenBankCP0026881e-116CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444176.18e-55PREDICTED: zinc finger CCCH domain-containing protein 63-like
RefseqXP_010444177.18e-55PREDICTED: zinc finger CCCH domain-containing protein 63-like
RefseqXP_010444179.18e-55PREDICTED: zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ12e-54C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLR0EU034e-53R0EU03_9BRAS; Uncharacterized protein
STRINGXP_010444176.13e-54(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.18e-57C3H family protein