PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa22437s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 67aa    MW: 7397.45 Da    PI: 8.4377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa22437s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.3e-102283056
             AP2 30 rfslgkfgtaeeAakaaiaarkklege 56
                    r++lg+++tae Aa a+++a+ kl+ge
  Csa22437s010.1  2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28
                    79***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.144135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-16236IPR001471AP2/ERF domain
PfamPF008472.4E-6228IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-12236IPR016177DNA-binding domain
SMARTSM003808.2E-6241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDP SELLGLGDSS KLIALKNAVD  60
GKIQSIC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa22437s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666894e-94AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287634e-94AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608764e-94AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330824e-94BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026844e-94CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473699.12e-41PREDICTED: ethylene-responsive transcription factor ERF061-like
RefseqXP_019093428.11e-41PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W22e-41ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA86e-40D7KSA8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__42__AT1G64380.11e-40(Arabidopsis lyrata)
STRINGXP_010418502.11e-40(Camelina sativa)
STRINGXP_010430572.11e-40(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-28ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]