PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa22754s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 53aa    MW: 6528.46 Da    PI: 10.6219
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa22754s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-091183956
                    S-HHHHHHHHHHHHHHHH CS
        Homeobox 39 LterqVkvWFqNrRakek 56
                    ++ rq+ +WFqNrRa++k
  Csa22754s010.1  1 MQPRQIAIWFQNRRARWK 18
                    5789*************9 PP
2HD-ZIP_I/II75.11.3e-241513888
     HD-ZIP_I/II 38 lqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
                    +qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L + +++L 
  Csa22754s010.1  1 MQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAYNKKLL 51
                    79*******************************************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.7E-6118IPR001356Homeobox domain
SuperFamilySSF466892.67E-8130IPR009057Homeodomain-like
CDDcd000862.91E-4121No hitNo description
Gene3DG3DSA:1.10.10.605.3E-9128IPR009057Homeodomain-like
PROSITE profilePS5007110.673120IPR001356Homeobox domain
PfamPF021838.8E-122053IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
MQPRQIAIWF QNRRARWKTR QLERDYDSLK KQFESLKSDN DSLLAYNKKL LAE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa22754s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288903e-76AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankATAC0082613e-76AC008261.5 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence.
GenBankAY0876313e-76AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292213e-76BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
GenBankCP0026863e-76CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884288.15e-30homeobox-leucine zipper protein ATHB-20
RefseqXP_010463554.17e-30PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X1
RefseqXP_010463555.17e-30PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X2
RefseqXP_010463556.14e-30PREDICTED: homeobox-leucine zipper protein ATHB-20 isoform X3
RefseqXP_010485524.17e-30PREDICTED: homeobox-leucine zipper protein ATHB-20-like
RefseqXP_010516613.17e-30PREDICTED: homeobox-leucine zipper protein ATHB-20-like isoform X1
RefseqXP_019099239.14e-30PREDICTED: homeobox-leucine zipper protein ATHB-20-like isoform X2
RefseqXP_023642332.15e-30homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT07e-30ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A178VB411e-28A0A178VB41_ARATH; HB20
TrEMBLD7LAH81e-28D7LAH8_ARALL; ATHB20
STRINGscaffold_300109.12e-29(Arabidopsis lyrata)
STRINGBostr.1460s0094.1.p2e-29(Boechera stricta)
STRINGXP_010463555.13e-29(Camelina sativa)
STRINGXP_010485524.13e-29(Camelina sativa)
STRINGXP_010516613.13e-29(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.13e-32homeobox protein 20