PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa23746s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 76aa MW: 8691.95 Da PI: 5.642

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa23746s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	98.1	1.3e-30	1	76	230	305
GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 +vkslsPkvv++veqe+++n++ F+ rf+e+++yy+a+f+s++++lpr++++ri+vE+++l+r++vn++acega+r Csa23746s010.1 1 MVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADR 76 69***********************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.6E-28	1	76	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	19.456	1	76	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MVKSLSPKVV TLVEQESNTN TAAFFPRFME TMNYYAAMFE SIDVTLPRDH KQRINVEQHC 60 LARDVVNIIA CEGADR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa23746s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023039	1e-105	AB023039.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIF21.
GenBank	AF153443	1e-105	AF153443.1 Arabidopsis thaliana phytochrome A signal transduction 1 protein (PAT1) mRNA, complete cds.
GenBank	AK117483	1e-105	AK117483.1 Arabidopsis thaliana At5g48150 mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL17-10-L05.
GenBank	AK317252	1e-105	AK317252.1 Arabidopsis thaliana AT5G48150 mRNA, complete cds, clone: RAFL22-43-D17.
GenBank	AK317747	1e-105	AK317747.1 Arabidopsis thaliana AT5G48150 mRNA, complete cds, clone: RAFL22-04-F15.
GenBank	BT025326	1e-105	BT025326.1 Arabidopsis thaliana At5g48150 mRNA, complete cds.
GenBank	CP002688	1e-105	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482060.1	2e-47	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_010482061.1	2e-47	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_010482062.1	2e-47	PREDICTED: scarecrow-like transcription factor PAT1
Refseq	XP_010482063.1	2e-47	PREDICTED: scarecrow-like transcription factor PAT1
Swissprot	Q9LDL7	2e-48	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	D7ML26	4e-46	D7ML26_ARALL; Uncharacterized protein
TrEMBL	R0G9L1	5e-46	R0G9L1_9BRAS; Uncharacterized protein
STRING	XP_010482060.1	7e-47	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	9e-51	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]