PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa24726s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 68aa    MW: 7991.09 Da    PI: 9.9638
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa24726s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-19268163
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltk 63
                    f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tk
  Csa24726s010.1  2 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTK 68
                    89****************************66677899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-18168IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-14168No hitNo description
Gene3DG3DSA:2.40.330.101.7E-25168IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-16268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAERFFPL DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS  60
SQSYVMTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-45168774B3 domain-containing transcription factor NGA1
5os9_B5e-45168774B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa24726s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044112e-86AC004411.3 Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence.
GenBankAC0053102e-86AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence.
GenBankAK1180452e-86AK118045.1 Arabidopsis thaliana At2g46870 mRNA for putative RAV-like B3 domain DNA binding protein, complete cds, clone: RAFL19-27-L04.
GenBankBT0085342e-86BT008534.1 Arabidopsis thaliana clone U50690 putative RAV B3 domain DNA binding protein (At2g46870) mRNA, complete cds.
GenBankCP0026852e-86CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankFJ8737312e-86FJ873731.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA1 (NGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294618.12e-42B3 domain-containing transcription factor NGA1
SwissprotO827992e-43NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLR0FXT04e-41R0FXT0_9BRAS; Uncharacterized protein
STRINGCagra.0050s0013.1.p7e-42(Capsella grandiflora)
STRINGXP_006294618.17e-42(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-46B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]