PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa25214s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 57aa    MW: 6623.53 Da    PI: 10.5717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa25214s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-082457135
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                     rg W   Ed +l ++v+  G+ +W+ Ia+ m+ gR
   Csa25214s010.1 24 RGHWRISEDTQLMELVAVNGPQNWNHIAENMQ-GR 57
                     79999***************************.98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3781957IPR017930Myb domain
SuperFamilySSF466891.87E-72157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-82257IPR009057Homeodomain-like
PfamPF002492.0E-72457IPR001005SANT/Myb domain
CDDcd001671.22E-42757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MQKKSDDDLK KKKKKQSGSR VCSRGHWRIS EDTQLMELVA VNGPQNWNHI AENMQGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa25214s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256153e-57AB025615.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K5K13.
GenBankAF2727323e-57AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
GenBankCP0026863e-57CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502910.16e-34PREDICTED: transcription factor MYB35 isoform X1
RefseqXP_010502911.13e-34PREDICTED: transcription factor WER isoform X2
TrEMBLD7LM748e-23D7LM74_ARALL; MYB110
STRINGXP_010502910.12e-33(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.15e-23myb domain protein 110