PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa25703s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 63aa MW: 7589.75 Da PI: 9.1665

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa25703s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	42.1	1.3e-13	1	62	295	355
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355 +nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ + ++k + + + ++e+s Csa25703s010.1 1 MNVIACEGIDRVERPETYKQWQVRMIRAGFKQKPVKAELVESFREKMKKWGyHKDFVLDEDS 62 59*******************************************99999988889999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.228	1	60	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-11	1	62	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MNVIACEGID RVERPETYKQ WQVRMIRAGF KQKPVKAELV ESFREKMKKW GYHKDFVLDE 60 DSN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa25703s010.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493440	2e-55	AB493440.1 Arabidopsis thaliana At1g07520 mRNA for hypothetical protein, partial cds, clone: RAAt1g07520.
GenBank	AC022464	2e-55	AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBank	CP002684	2e-55	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457933.1	4e-37	PREDICTED: scarecrow-like protein 31
Refseq	XP_010487532.1	4e-37	PREDICTED: scarecrow-like protein 31
Swissprot	Q3EDH0	4e-36	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A1J3E9B1	2e-34	A0A1J3E9B1_NOCCA; Scarecrow-like protein 31
TrEMBL	A0A1J3JRN6	2e-34	A0A1J3JRN6_NOCCA; Scarecrow-like protein 31
STRING	XP_010457932.1	2e-36	(Camelina sativa)
STRING	XP_010487532.1	1e-36	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32595	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	2e-38	GRAS family protein