PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa28725s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 53aa    MW: 5866.32 Da    PI: 4.8026
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa28725s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.3e-071552338
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38
                     +WT+  d+++  a + +  +   +W  +ar +g g++++
   Csa28725s010.1 15 SWTPKQDKQFEMALATYDQDtpdRWQNVARAVG-GKSAE 52
                     7*****************99*************.**987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.22E-91052IPR009057Homeodomain-like
PfamPF002491.6E-51552IPR001005SANT/Myb domain
CDDcd001676.55E-51653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
MASNSISTSR SSNSSWTPKQ DKQFEMALAT YDQDTPDRWQ NVARAVGGKS AEE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa28725s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414205.11e-31PREDICTED: protein RADIALIS-like 4
RefseqXP_010497931.15e-32PREDICTED: protein RADIALIS-like 3, partial
SwissprotQ1A1731e-17RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A315A6X62e-24A0A315A6X6_PRUYE; Protein RADIALIS-like 4
STRINGXP_010414205.14e-31(Camelina sativa)
STRINGXP_010497931.12e-31(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36570.13e-19RAD-like 3