PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa30087s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 76aa    MW: 8967.34 Da    PI: 10.8516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa30087s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-141864455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Csa30087s010.1 18 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 64
                    799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-181374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2341463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-101768No hitNo description
PfamPF000101.3E-111864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-181874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-142069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
KPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLADAITYI  60
TDMQKKIRVY ETEQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-291274264Transcription factor MYC2
5gnj_B3e-291274264Transcription factor MYC2
5gnj_E3e-291274264Transcription factor MYC2
5gnj_F3e-291274264Transcription factor MYC2
5gnj_G3e-291274264Transcription factor MYC2
5gnj_I3e-291274264Transcription factor MYC2
5gnj_M3e-291274264Transcription factor MYC2
5gnj_N3e-291274264Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa30087s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516883e-95AF251688.1 Arabidopsis thaliana putative transcription factor BHLH3 (BHLH3) mRNA, complete cds.
GenBankAL1615443e-95AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY0576263e-95AY057626.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds.
GenBankBT0023013e-95BT002301.1 Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds.
GenBankCP0026873e-95CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973413e-95Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451453.28e-48PREDICTED: transcription factor bHLH3-like
SwissprotO234872e-43BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A087G9I92e-41A0A087G9I9_ARAAL; Uncharacterized protein
TrEMBLA0A2N9GI021e-41A0A2N9GI02_FAGSY; Uncharacterized protein
TrEMBLD7M9V33e-41D7M9V3_ARALL; Basic helix-loop-helix family protein
STRINGXP_010451453.12e-46(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.19e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]