PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa30146s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 74aa    MW: 8594.58 Da    PI: 8.6961
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa30146s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-083352626
                    -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                    C+ f+  G C++Gd+C FaHg
  Csa30146s010.1 33 CPAFRN-GACHRGDSCEFAHG 52
                    777776.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4272754IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-42753IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-52857IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-73252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-63355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
TRSHDWTECP YAHRGEKATR RDPRRYTYCA VACPAFRNGA CHRGDSCEFA HGVFEYWLHP  60
ARYRTRACNA GNLC
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa30146s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2928613e-98AY292861.1 Boechera drummondii zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), pollen specific glycine-rich protein GRP20 (GRP20), transcription-factor-like protein (Bd5g07580), and WD repeat-like protein (Bd5g07590) genes, complete cds; and oleosin (Bd5g07600) and F box protein family (Bd5g07610) genes, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286651.15e-49zinc finger CCCH domain-containing protein 54
RefseqXP_010491369.23e-49PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650366e-50C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLQ6V5E11e-47Q6V5E1_OLIPU; Zn-finger transcription factor
TrEMBLQ6V5F91e-47Q6V5F9_9BRAS; Zn-finger transcription factor
STRINGCagra.2925s0033.1.p2e-48(Capsella grandiflora)
STRINGXP_006286651.12e-48(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-52C3H family protein