PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa32759s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 54aa MW: 6082.01 Da PI: 6.4986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa32759s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00047	4	24	34	54
TTS-STCHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksL 54 ++ K++ +++L +A++Y+k L Csa32759s010.1 4 GGAKMDTVSMLDEAIRYVKFL 24 5789***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.3E-5	1	28	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.566	1	24	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-6	2	36	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
MVPGGAKMDT VSMLDEAIRY VKFLKAQIWF HQNMLVFLND HETTSSCTYS PATG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa32759s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019084662.1	3e-34	PREDICTED: transcription factor bHLH140-like
Refseq	XP_019089882.1	3e-34	PREDICTED: transcription factor bHLH140-like isoform X1
Refseq	XP_019089883.1	3e-34	PREDICTED: transcription factor bHLH140-like isoform X2
Swissprot	Q9M041	4e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A178UDM7	5e-29	A0A178UDM7_ARATH; Transcription factor bHLH140-like protein
TrEMBL	A0A384K8T2	5e-29	A0A384K8T2_ARATH; Uncharacterized protein
STRING	XP_010495035.1	9e-33	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	2e-31	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]