PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa33192s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 66aa    MW: 7669.79 Da    PI: 10.7406
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa33192s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.31.3e-2226554116
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkg 116
                     +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  +++ +glkk+Lvfy+gra kg
  Csa33192s010.1   2 GEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTRCIGLKKSLVFYRGRAAKG 65 
                     579*************************************9856677**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.086166IPR003441NAC domain
SuperFamilySSF1019412.09E-23266IPR003441NAC domain
PfamPF023656.0E-8659IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MGEKEWYFYC PRDRKYRNST RPNRVTGGGF WKATGTDRPI YSLDSTRCIG LKKSLVFYRG  60
RAAKGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-2216668131NO APICAL MERISTEM PROTEIN
1ut4_B3e-2216668131NO APICAL MERISTEM PROTEIN
1ut7_A3e-2216668131NO APICAL MERISTEM PROTEIN
1ut7_B3e-2216668131NO APICAL MERISTEM PROTEIN
3swm_A4e-2216671134NAC domain-containing protein 19
3swm_B4e-2216671134NAC domain-containing protein 19
3swm_C4e-2216671134NAC domain-containing protein 19
3swm_D4e-2216671134NAC domain-containing protein 19
3swp_A4e-2216671134NAC domain-containing protein 19
3swp_B4e-2216671134NAC domain-containing protein 19
3swp_C4e-2216671134NAC domain-containing protein 19
3swp_D4e-2216671134NAC domain-containing protein 19
4dul_A3e-2216668131NAC domain-containing protein 19
4dul_B3e-2216668131NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa33192s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168768e-71AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026888e-71CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686038e-71HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285478.19e-44putative NAC domain-containing protein 94
SwissprotQ9FIW52e-44NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A178UNX82e-42A0A178UNX8_ARATH; NAC094
TrEMBLR0F9M72e-42R0F9M7_9BRAS; Uncharacterized protein
STRINGCagra.5905s0003.1.p3e-43(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-46NAC domain containing protein 94