PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa34577s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 70aa MW: 7589.73 Da PI: 10.6376

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa34577s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	152.2	9e-47	1	70	227	296
GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 +GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGy+ls+pvDLk+hWA+HGtnk Csa34577s010.1 1 MGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLAGEGYSLSHPVDLKNHWARHGTNK 70 6********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.7E-6	1	70	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.0E-41	2	70	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGGWQSSCCT ISISTYPLPM STTRPGARLA GRKMSNGAYV KLLARLAGEG YSLSHPVDLK 60 NHWARHGTNK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa34577s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU089961	7e-90	EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516733.1	2e-45	PREDICTED: protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-44	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	R0HUS9	3e-43	R0HUS9_9BRAS; Uncharacterized protein
STRING	XP_010516733.1	8e-45	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	5e-47	basic pentacysteine 7