PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa36937s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 67aa    MW: 7084.03 Da    PI: 9.5273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa36937s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS81.41.6e-2516699162
            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetg 162
                     N aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g
  Csa36937s010.1   1 NGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVG 66 
                     89*************************************************998877777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.4E-23166IPR005202Transcription factor GRAS
PROSITE profilePS5098520.468167IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPKVRITGID DPRSSFARQG  60
GLELVGQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa36937s010.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125615e-72AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792795e-72AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankAF0363025e-72AF036302.1 Arabidopsis thaliana scarecrow-like 5 (SCL5) mRNA, partial cds.
GenBankAY0349295e-72AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds.
GenBankAY0396115e-72AY039611.1 Arabidopsis thaliana F17J6.12/F17J6.12 mRNA, complete cds.
GenBankBT0008835e-72BT000883.1 Arabidopsis thaliana clone C105359 putative scarecrow protein (At1g50600) mRNA, complete cds.
GenBankCP0026845e-72CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481091.12e-41PREDICTED: scarecrow-like protein 5
RefseqXP_010500634.13e-41PREDICTED: scarecrow-like protein 5
SwissprotQ8H1253e-41SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A078GCM15e-40A0A078GCM1_BRANA; BnaA06g02700D protein
TrEMBLD7KGQ46e-40D7KGQ4_ARALL; Uncharacterized protein
TrEMBLM4EBB82e-40M4EBB8_BRARP; Uncharacterized protein
STRINGBra026077.1-P4e-41(Brassica rapa)
STRINGfgenesh2_kg.1__4145__AT1G50600.19e-41(Arabidopsis lyrata)
STRINGXP_010461911.11e-40(Camelina sativa)
STRINGXP_010481091.18e-41(Camelina sativa)
STRINGXP_010500634.11e-40(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-43scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]