PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.005360.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 242aa    MW: 26678.6 Da    PI: 9.4218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.005360.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-11124171455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cucsa.005360.2 124 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 171
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-18118188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-9118175No hitNo description
PROSITE profilePS5088815.828120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-18120188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEGGELRMDS PRKPHKDVTN LLPSLEQRLP HGHGVSKKRR DSDQDSPKVS STSNGNNANA  60
NSSAGNDSGG KRVKTAACRD DNHESKTEAE PRSGKTEQNS QPTPEQPKQD YIHVRARRGQ  120
ATDSHSLAER ARREKISERM KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK  180
LEAVNSRIGP GIEVFPPKDY GQQTFDTTGV AFGSQATREY SRGSSPEWLH MQIGGGFERT  240
T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818223e-98LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBankLN7132573e-98LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146756.11e-147PREDICTED: transcription factor bHLH79
SwissprotQ69WS34e-79BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0A0KG051e-145A0A0A0KG05_CUCSA; Uncharacterized protein
STRINGXP_004146756.11e-146(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-89BIG PETAL P