PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.010660.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 613aa    MW: 69314.5 Da    PI: 4.8053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.010660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12361404755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N+++ +Lr l+Pk +      K++Ka+iL  A++++k+Lq
  Cucsa.010660.1 361 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 404
                     68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-186156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.853354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17356417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-13356408No hitNo description
SMARTSM003532.8E-16360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-10361404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16361417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MQINLVERLR PLVGTKSWDY CVLWKLSQDQ RCIEWMDCCC AGTENNNNQN GNGEEELVLP  60
VSQVIQCRDT ICPHPRASSC ELLDQLPCSM PLNSGVYIQT LLSNEPNWLL FSNAADSTAP  120
DETTVTRVLV PFAFGLVELF VAKHASEDQH VIDFVTTQCN VWMEQEAVID SSNMETSFSV  180
DVNATNGIQS KPFVADQNVV LRDSENQFEA PGSVTLTLEN TNVGYDISLD RIRLCNSPMN  240
LQRFNYSSEN KNKNEIFTEC SHDSFLIDKQ GKPYKVSAEN ELEEVDTIHG SIMNTSNTHG  300
QFKENMMEYK EQQREEKDLV KHENGRSDSI SDCSDRLEDE DDAIAKYRRR TGQGPQSKNL  360
VAERKRRKKL NERLYNLRAL VPKISKMDKA SILGDAIDFV KELQKQVKEL RDELEEHSDD  420
ENGKTGLSGN NGNYNIVQLP EFLSQHDKAQ NSYHMGVLGS GSILKQNLQD TEGTSNDKTQ  480
QMEPQVEVAQ IDGNEFFIKV FCEKKRGGFV SLMEALNALG LEVTNANVTS YRGLVSNVFK  540
VKKKDSEMVQ ADDVRDSLLE ITKYPCRGWS DIIKAPECIG SRMDYQPHPH PHPHQHSFQD  600
KAINSRIHLL DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-133624291280Transcription factor MYC2
5gnj_B5e-133624291280Transcription factor MYC2
5gnj_E5e-133624291280Transcription factor MYC2
5gnj_F5e-133624291280Transcription factor MYC2
5gnj_G5e-133624291280Transcription factor MYC2
5gnj_I5e-133624291280Transcription factor MYC2
5gnj_M5e-133624291280Transcription factor MYC2
5gnj_N5e-133624291280Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347368RRRTGQGPQSKNLVAERKRRKK
2362369ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142831.20.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A1S4E2650.0A0A1S4E265_CUCME; transcription factor ABORTED MICROSPORES isoform X1
STRINGXP_004142831.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-127bHLH family protein