PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.011210.1
Common NameCsa_5G523000, LOC101216003
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 399aa    MW: 44584.7 Da    PI: 5.4051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.011210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.33.9e-29551971128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 
                     lp+G++F+Ptd+e++ ++L++k++  +      ++++   +++  +i++++P++Lp  v+++ ++++fF+k++++yatg+rk+r+         +
  Cucsa.011210.1  55 LPAGVKFDPTDDEIM-DHLAAKCAVGNlkphvlIDEFIPtLETDqGICYTHPENLP-GVSKDGNDVHFFHKTNNAYATGQRKRRKieseqnssLQ 147
                     799**********99.999999998886665443332221222236**********.6677889********************85666555544 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+k+++s +g ++g kk++ +y  ++  +k+ek++Wv+h+y+l
  Cucsa.011210.1 148 HFRWHKTGKTKAMIS-NGVHKGWKKIFSLYrsSKGGSKPEKSNWVIHQYHL 197
                     677***********9.999***********4423456778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-3540216IPR003441NAC domain
PROSITE profilePS5100529.71555216IPR003441NAC domain
PfamPF023651.7E-1256197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MARSWITDGR TIARKVRHIN QPPSQVIKDC DAKRECPNCN FMIDNTDVLS EWPGLPAGVK  60
FDPTDDEIMD HLAAKCAVGN LKPHVLIDEF IPTLETDQGI CYTHPENLPG VSKDGNDVHF  120
FHKTNNAYAT GQRKRRKIES EQNSSLQHFR WHKTGKTKAM ISNGVHKGWK KIFSLYRSSK  180
GGSKPEKSNW VIHQYHLGTE EDEKEGEYVL SKICYQQPKQ SIKNNDNMLI EYLDAMLHQT  240
SPRTPKSNPP VPPRSGKSLV SNPVADNSLP QSLAKEEELT PEASRVSYAN ISSENDGGCH  300
GWLAGESQDI ADGELHYLED NLLCNEVLDS SALISNNQVN QIPFPLSGSN AYHEIANDNV  360
PCGIADLENL DLDTPPDFHL ADLQFGSQES IFDWIDRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655393.10.0PREDICTED: NAC domain-containing protein 8
TrEMBLA0A0A0KR240.0A0A0A0KR24_CUCSA; Uncharacterized protein
STRINGXP_004156732.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-94NAC domain containing protein 44
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]