PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.011210.2
Common NameCsa_5G523000, LOC101216003
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 358aa    MW: 39846.2 Da    PI: 4.8767
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.011210.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.63.1e-29141561128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 
                     lp+G++F+Ptd+e++ ++L++k++  +      ++++   +++  +i++++P++Lp  v+++ ++++fF+k++++yatg+rk+r+         +
  Cucsa.011210.2  14 LPAGVKFDPTDDEIM-DHLAAKCAVGNlkphvlIDEFIPtLETDqGICYTHPENLP-GVSKDGNDVHFFHKTNNAYATGQRKRRKieseqnssLQ 106
                     799**********99.999999998886665443332221222236**********.6677889********************85666555544 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+k+++s +g ++g kk++ +y  ++  +k+ek++Wv+h+y+l
  Cucsa.011210.2 107 HFRWHKTGKTKAMIS-NGVHKGWKKIFSLYrsSKGGSKPEKSNWVIHQYHL 156
                     677***********9.999***********4423456778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-342175IPR003441NAC domain
PROSITE profilePS5100529.71514175IPR003441NAC domain
PfamPF023651.3E-1215156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIDNTDVLSE WPGLPAGVKF DPTDDEIMDH LAAKCAVGNL KPHVLIDEFI PTLETDQGIC  60
YTHPENLPGV SKDGNDVHFF HKTNNAYATG QRKRRKIESE QNSSLQHFRW HKTGKTKAMI  120
SNGVHKGWKK IFSLYRSSKG GSKPEKSNWV IHQYHLGTEE DEKEGEYVLS KICYQQPKQS  180
IKNNDNMLIE YLDAMLHQTS PRTPKSNPPV PPRSGKSLVS NPVADNSLPQ SLAKEEELTP  240
EASRVSYANI SSENDGGCHG WLAGESQDIA DGELHYLEDN LLCNEVLDSS ALISNNQVNQ  300
IPFPLSGSNA YHEIANDNVP CGIADLENLD LDTPPDFHLA DLQFGSQESI FDWIDRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655393.10.0PREDICTED: NAC domain-containing protein 8
TrEMBLA0A0A0KR240.0A0A0A0KR24_CUCSA; Uncharacterized protein
STRINGXP_004156732.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.13e-79NAC domain containing protein 85
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]