PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.011680.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 71aa MW: 7630.15 Da PI: 10.0668

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.011680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.2	4.2e-12	27	67	2	47
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 C aCk+l++ C+lapyfp +q+ kf ++h++F++sn++kll Cucsa.011680.1 27 CMACKILEK-----CILAPYFPPSQSFKFTIAHRIFSTSNIIKLLL 67 999999998.....*****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.627	20	70	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-9	27	67	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
RLQLSQSPPS SPSPSSIVQA SVVVSLCMAC KILEKCILAP YFPPSQSFKF TIAHRIFSTS 60 NIIKLLLVLP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-32	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-32	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463550.1	5e-19	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-15	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	2e-15	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1S3CK12	1e-17	A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRING	XP_008463550.1	2e-18	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-16	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Cucsa.011680.1