PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.014000.1

Common Name

Csa_5G352090, LOC101214586

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 238aa MW: 24430.5 Da PI: 10.5726

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.014000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.9	2.9e-37	13	86	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ Cucsa.014000.1 13 PVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStI 86 579*************************************************************9999977731 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.992	19	73	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-32	19	99	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
GNQSSNNAAT PLPVKKPPSK DRHSKVDGRG RRIRMPIVCA ARVFQLTREL GHKSDGQTIE 60 WLLRQAEPSI IAATGTGTTP ASFSTISASL RTPPAASLSD HKPLLPPAPF ILGKRVRTDD 120 DGANKDDTGG AGAGISVGPS IGSIMGPAVA GGYWAIPARS DFGQVWSFAA AAAAAAAPEM 180 VIQPTAVSHQ ASLFVQQQSM GEASAAKVGN YLPGHLNLLA SLSGGPGSSG RRDNDHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681859	0.0	LN681859.1 Cucumis melo genomic scaffold, anchoredscaffold00078.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149871.1	1e-171	PREDICTED: transcription factor TCP21
Swissprot	Q9FMX2	2e-86	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A0KMY3	1e-170	A0A0A0KMY3_CUCSA; Uncharacterized protein
STRING	XP_004149871.1	1e-170	(Cucumis sativus)
STRING	XP_004166070.1	1e-170	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-65	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.014000.1
Entrez Gene	101214586

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]