PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.016540.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 153aa    MW: 17579.7 Da    PI: 10.476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.016540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-18853147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W+ +a++++ gR++k+c++rw++ 
   Cucsa.016540.1  8 RGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQ-GRSGKSCRLRWFNQ 53
                     899*****************************.***********996 PP
2Myb_DNA-binding60.63.2e-1960103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l++a+  +G++ W++Iar ++ gRt++ +k++w+ 
   Cucsa.016540.1  60 RRPFTEEEEERLLEAHGIHGNK-WALIARLFP-GRTDNAVKNHWHV 103
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.716154IPR017930Myb domain
SuperFamilySSF466891.38E-306101IPR009057Homeodomain-like
SMARTSM007175.9E-14756IPR001005SANT/Myb domain
PfamPF002492.0E-17853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-27961IPR009057Homeodomain-like
CDDcd001677.31E-131152No hitNo description
PROSITE profilePS5129428.13755109IPR017930Myb domain
SMARTSM007176.3E-1659107IPR001005SANT/Myb domain
PfamPF002492.7E-1660102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2262108IPR009057Homeodomain-like
CDDcd001677.40E-674102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
DDVKSCPRGH WRPAEDEKLR QLVQQHGPQN WNFVAEKLQG RSGKSCRLRW FNQLDPRINR  60
RPFTEEEEER LLEAHGIHGN KWALIARLFP GRTDNAVKNH WHVIMARKQR QQSNNNNLST  120
RKKITNITAA EDCSADSGSR NFETLTTGGI IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-3331082107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818171e-131LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132571e-131LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022753591.17e-72trichome differentiation protein GL1-like
RefseqXP_028084369.19e-72transcription factor MYB56-like
SwissprotQ5NBM85e-64CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A1S4CZL17e-70A0A1S4CZL1_TOBAC; transcription factor LAF1-like
TrEMBLA0A1U7VS807e-70A0A1U7VS80_NICSY; transcription factor LAF1-like
TrEMBLA0A2R6Q2F66e-70A0A2R6Q2F6_ACTCH; Transcription factor like
STRINGXP_004145412.12e-82(Cucumis sativus)
STRINGXP_004167352.12e-82(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.14e-61myb domain protein 54
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]