PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.016990.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 202aa    MW: 22279.9 Da    PI: 5.4534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.016990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000224466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  Cucsa.016990.1 44 YECVFCKRGFTTAQALGGHMNIH 66
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-64170No hitNo description
Gene3DG3DSA:3.30.160.605.2E-44270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6584471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDPDHIPTTT TIAATTTTDQ DQSSKPTTED TDQINNEMGS GRSYECVFCK RGFTTAQALG  60
GHMNIHRKDR VKNKPNTPSK PEPFTNHSST LRPMLTTTAA VTTVSHHQSF QTYFPTSSTW  120
CLGTTTSSPP HDHQFSYVHN NPQVLNTFKD QNWTTTNMSL ASQSSPTLAL SDGRDKRSDG  180
NGGDDDDGDE ELDLELRLGH DX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149183.11e-148PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S4E0311e-109A0A1S4E031_CUCME; transcriptional regulator SUPERMAN-like
STRINGXP_004149183.11e-147(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-14C2H2 family protein