PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.026590.1

Common Name

Csa_5G092920, LOC101208745

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

BBR-BPC

Protein Properties

Length: 278aa MW: 30995.7 Da PI: 10.5157

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.026590.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	313.3	8.3e-96	1	277	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 md d+ + rn+gyyep+ lk +lglqlms+i erd k r+ + + + +aa+++r+ ++ rd ++++ ++kl+ Cucsa.026590.1 1 MDGDALNMRNWGYYEPS--LKAHLGLQLMSTIGERDVKHfmpgRDPSA-IVNMNAAFHPREsvvseapvvTNW-ARDGWINH--------RDKLF 83 99999988*****99..***************9999766665.9*******888888886566.78888888........67888 PP GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 ++l ++s ++ l +t+ ++ lq l+ + ++++ e +l+ie +++++k +k++kkrq++ pk++k kk++k + k Cucsa.026590.1 84 NVLSPNTS--------YSLLAETSAAQPLQI-----LQ--PLDTSRDE--MVLKIE-EPPVKKGTKQPKKRQNGGAPKTPKPKKPRK--P----K 154 88886665........889999999999988.....33..34433444..345554.48889999999*************99..2....2 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++ +s+ +++ka+kk+++lv+ng ++D+s++P+PvCsCtG+++qCY+WG GGWqSaCCtt++S +PLP+s krrgaRiagrKmSqgafkk+LekL Cucsa.026590.1 155 NNDPSV-QQVKAPKKKMELVINGFDMDISSIPIPVCSCTGTPHQCYRWGYGGWQSACCTTSLSLHPLPMSEKRRGARIAGRKMSQGAFKKVLEKL 248 333443.579********************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aa+Gy++snp+DL++hWA+HGtnkfvtir Cucsa.026590.1 249 AAQGYNFSNPIDLRSHWARHGTNKFVTIR 277 **************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.3E-147	1	277	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.4E-105	2	277	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDGDALNMRN WGYYEPSLKA HLGLQLMSTI GERDVKHFMP GRDPSAIVNM NAAFHPRESV 60 VSEAPVVTNW ARDGWINHRD KLFNVLSPNT SYSLLAETSA AQPLQILQPL DTSRDEMVLK 120 IEEPPVKKGT KQPKKRQNGG APKTPKPKKP RKPKNNDPSV QQVKAPKKKM ELVINGFDMD 180 ISSIPIPVCS CTGTPHQCYR WGYGGWQSAC CTTSLSLHPL PMSEKRRGAR IAGRKMSQGA 240 FKKVLEKLAA QGYNFSNPID LRSHWARHGT NKFVTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150151.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9SKD0	1e-93	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A0A0KLI8	0.0	A0A0A0KLI8_CUCSA; Uncharacterized protein
STRING	XP_004173241.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-92	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Cucsa.026590.1
Entrez Gene	101208745

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]