PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.031290.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 198aa    MW: 22811.8 Da    PI: 7.5413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.031290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.7e-08139194455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L+ ++P +       +++ +  a++L ++++Y+ sLq
  Cucsa.031290.1 139 SHSLAERVRREKINHKLKCLQNIIPGCHkvncFFHGPSMGMAMVLDETINYVYSLQ 194
                     8************************9866776333445677788888888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-7133198No hitNo description
SuperFamilySSF474596.54E-13133198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.246135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-13135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5139194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTEFRQNLQH FKSSKASEEM TFNMEVINQF SNAMESALED FNETESSVEN FWGYHFQLPE  60
NTSPSSLSNF SSVALLKCQK EFPVITRSSL PVDSAQETMK RKEKQNMEGG RKRRNCEKEQ  120
EKPGEVVHVR AKRGQATDSH SLAERVRREK INHKLKCLQN IIPGCHKVNC FFHGPSMGMA  180
MVLDETINYV YSLQNQVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199113KRKEKQNMEGGRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818541e-140LN681854.1 Cucumis melo genomic scaffold, anchoredscaffold00042.
GenBankLN7132601e-140LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651378.11e-126PREDICTED: transcription factor BEE 3-like isoform X2
TrEMBLA0A1S3C5R81e-113A0A1S3C5R8_CUCME; transcription factor BEE 3-like isoform X2
STRINGXP_008456994.11e-99(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-33bHLH family protein