PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.032230.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 231aa MW: 27498.2 Da PI: 7.3264

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.032230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.2	4.5e-25	117	163	5	51
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + le+++ky++ pi +AAke++v+lTvLKr+CRq++I+RWPhRk+ks Cucsa.032230.1 117 LGLEEIKKYYHIPISEAAKEMNVGLTVLKRRCRQLNIMRWPHRKLKS 163 6799******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.03	104	186	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-23	117	163	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDSNPQTFHN IPQFDFEWLH EDLFPFHNEL DELPPLDKDE FLDVNSSGSL LSFHLVDNNV 60 LEFESEFLSR EMDEIERKGL SSSTWKEEEE EEEEGEKRLR LMRNNNGNKR RKRSFVLGLE 120 EIKKYYHIPI SEAAKEMNVG LTVLKRRCRQ LNIMRWPHRK LKSYNSLIQN VKEMGLTNEV 180 KGLEEQKRLL VESPNMDLTH TTKRLRQACF KDKYRKNRRL RSNNIASLHH *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681850	1e-149	LN681850.1 Cucumis melo genomic scaffold, anchoredscaffold01597.
GenBank	LN713260	1e-149	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466842.1	1e-126	PREDICTED: protein RKD4
TrEMBL	A0A1S3CS47	1e-125	A0A1S3CS47_CUCME; protein RKD4
TrEMBL	E5GBA6	1e-125	E5GBA6_CUCME; Transcription factor
STRING	XP_004163842.1	1e-168	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-37	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.032230.1