PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.032330.1

Common Name

Csa_3G238150, LOC101207601

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 212aa MW: 23247.7 Da PI: 8.5631

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.032330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.8e-39	20	79	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 k+++l+cprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGg++rknk+ Cucsa.032330.1 20 KDQILNCPRCNSNNTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGASRKNKRP 79 6899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	21	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	21	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MELEEEGLKA VVERKAKARK DQILNCPRCN SNNTKFCYYN NYSLSQPRYF CKSCRRYWTA 60 GGSLRNIPVG GASRKNKRPS ANFSLPPSKN NQKNYNNDGG DDDDQGISQL NINITSCSST 120 ATTTNTATSC CWLSSDNDHM NNQIMLRSNG IMSQRELIPF IPMPAPAPPQ PTAVAALEDF 180 KQLSTIISTD QNGAKLGDAP AFWSGIFGGG SX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	20	RKAKARKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681851	0.0	LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146271.1	1e-157	PREDICTED: dof zinc finger protein DOF1.8-like
Refseq	XP_011651310.1	1e-157	PREDICTED: dof zinc finger protein DOF1.8-like
Refseq	XP_011651312.1	1e-157	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A0A0L9J3	1e-155	A0A0A0L9J3_CUCSA; Uncharacterized protein
STRING	XP_004146271.1	1e-156	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24484	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.032330.1
Entrez Gene	101207601

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]