PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.032420.2

Common Name

Csa_3G236580

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HB-other

Protein Properties

Length: 351aa MW: 38466.1 Da PI: 7.2072

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.032420.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.7e-06	15	53	27	55
HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkkl..........gLterqVkvWFqNrRake 55 +e LA+k ++ +qV +WFqNrR+ Cucsa.032420.2 15 REVLVALADKFsesverkgkiAVQMKQVWNWFQNRRYAI 53 5555555555555555555558899***********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.394	1	56	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-4	1	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-8	9	56	IPR009057	Homeodomain-like
Pfam	PF16719	6.7E-41	105	230	IPR032001	SAWADEE domain
CDD	cd00024	0.00677	117	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEAILQGHNN TMPAREVLVA LADKFSESVE RKGKIAVQMK QVWNWFQNRR YAIRAKTSKA 60 PGKLAVSPVV QIESTPVRNV PQTVVVPAPA PVGSAKGAPE NPLSEFEAKS GRDGAWYDVA 120 TFLSHRSVES GDPEVLVRFS GFGSEEDEWV NIRRNIRPRS LPCESSECVA VLPGDLILCF 180 QEGKEQALYF DAHVLDTQRR RHDVRGCRCR FLVRYDHDQS EEIVQLRKIC RRPETDYRLQ 240 QLHAVNEAAS IEPSKSGMDS VLLSGQRINF ETSQNPLSKD AALVIPNANP HINAHAQTST 300 QEARNTETNT APTTFNSANL AGSSAFSSGI VTNTVSAGSA DNVSDGKLLS *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEAILQGHNN TMPAREVLVA LADKFSESVE RKGKIAVQMK QVWNWFQNRR YAIRAKTSKA  60
PGKLAVSPVV QIESTPVRNV PQTVVVPAPA PVGSAKGAPE NPLSEFEAKS GRDGAWYDVA  120
TFLSHRSVES GDPEVLVRFS GFGSEEDEWV NIRRNIRPRS LPCESSECVA VLPGDLILCF  180
QEGKEQALYF DAHVLDTQRR RHDVRGCRCR FLVRYDHDQS EEIVQLRKIC RRPETDYRLQ  240
QLHAVNEAAS IEPSKSGMDS VLLSGQRINF ETSQNPLSKD AALVIPNANP HINAHAQTST  300
QEARNTETNT APTTFNSANL AGSSAFSSGI VTNTVSAGSA DNVSDGKLLS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	1e-46	106	234	6	134	SHH1 SAWADEE
4iur_B	1e-46	106	234	6	134	SHH1 SAWADEE
4iut_A	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	1e-46	106	234	6	134	SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681851	1e-143	LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBank	LN713260	1e-143	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651299.1	0.0	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
Swissprot	Q8RWJ7	1e-123	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A1S3C2X6	0.0	A0A1S3C2X6_CUCME; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
STRING	XP_004159861.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-109	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Cucsa.032420.2

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]