PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.032880.1
Common NameCsa_3G225830
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 378aa    MW: 42507.9 Da    PI: 8.7309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.032880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.41.5e-082432891763
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     A+rsR RK+++i+eLe+kv++L+ae ++   ele l+++   l +e+
  Cucsa.032880.1 243 AQRSRVRKLQYIAELERKVQALQAEGTEVSAELEFLNQQNLILSMEN 289
                     89***********************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0011232291IPR004827Basic-leucine zipper domain
CDDcd147032.14E-15236282No hitNo description
SuperFamilySSF579592.42E-6243285No hitNo description
Gene3DG3DSA:1.20.5.1708.5E-6243285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MANSKGSSNV RSFMSSGKHA LLPPKSPFPS VSPSYTEYVP NTVIGAKAVQ RPRDGNIYHQ  60
RTSSESILIE EQPSWLDDLL NEPETPVRRV GHRRSSSDSF AYTDAANVNF DSIMQEEFRY  120
ANAVPGHSWL SQEFDHQRDA RHASFYTEPN VTKQKNRVWE SSLSTMNNPI ALHSPRETIG  180
IHTSGPLSTP QEADGLPSTA SEKQDPVESG SHDPKVASDR KDTSHGKSTV SDTENKRAKQ  240
QFAQRSRVRK LQYIAELERK VQALQAEGTE VSAELEFLNQ QNLILSMENK ALKQRLENLA  300
QEQLIKYLEQ EVLEREIGRL RTVHQQHQQQ QQPQQLRPSS SHRRTSSKDL DNQFANLSLK  360
QKDSGSSRDS VTGPVRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146254.10.0PREDICTED: uncharacterized protein At4g06598
TrEMBLA0A0A0L9F30.0A0A0A0L9F3_CUCSA; Uncharacterized protein
STRINGXP_004146254.10.0(Cucumis sativus)
STRINGXP_004159870.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51232637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-111bZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]