PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.038760.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 187aa    MW: 21104.6 Da    PI: 4.7369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.038760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-191867255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr+++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a+++++g
  Cucsa.038760.1 18 IYRGVRRRS-WGKWVSEIRQPRK---KSRIWLGTFTTAEMAARAHDVAALSIKG 67
                    69****887.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-131767IPR001471AP2/ERF domain
CDDcd000185.38E-291777No hitNo description
PROSITE profilePS5103223.2221877IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-201878IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-311878IPR001471AP2/ERF domain
SMARTSM003803.3E-341883IPR001471AP2/ERF domain
PRINTSPR003674.0E-111930IPR001471AP2/ERF domain
PRINTSPR003674.0E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKRGKQRNQE QRDQKHPIYR GVRRRSWGKW VSEIRQPRKK SRIWLGTFTT AEMAARAHDV  60
AALSIKGDSA KAILNFPQLA GLLPRPVSLM PRDIQEAAAK AAAMVDFDSE TVSFSNGEEG  120
SDELAEIVEL PNIEEDIRAE SWNEFEFIDS VDWWGNPPFT AAEMDFCAVF SDQSTAPVTF  180
DRGDWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1816781273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651488.11e-135PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391279e-51TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1S3BHN51e-132A0A1S3BHN5_CUCME; ethylene-responsive transcription factor TINY
STRINGXP_004151284.11e-135(Cucumis sativus)
STRINGXP_004171212.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]