PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.040380.1
Common NameCsa_3G523580, LOC101211941
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 209aa    MW: 22964.7 Da    PI: 4.9798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.040380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.66.6e-12128102129
             NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                     ++ktLvfy+grapkg+kt+Wvmhe+rle
  Cucsa.040380.1   1 MRKTLVFYQGRAPKGRKTEWVMHEFRLE 28 
                     89***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.361151IPR003441NAC domain
PfamPF023653.4E-4127IPR003441NAC domain
SuperFamilySSF1019413.66E-15151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRKTLVFYQG RAPKGRKTEW VMHEFRLEGP FSPITDPSPK EDWVLCRLFC KQKEVTPQPS  60
TGSSSCYNDT IGSSSSLPAL MDSYISFDQN PNSHLNEYEQ VPCFSIFSHN QTIPTLTNLI  120
QMEANTGNNI KNLSTMFGGG MPNSTTCSSN IDPFTCDSKV LKVVLNNITK METNGSSFIG  180
QTSMGEGSSD SYLSEVGVGD DIASLWNR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150776.11e-153PREDICTED: NAC domain-containing protein 21/22-like isoform X1
RefseqXP_011651529.11e-153PREDICTED: NAC domain-containing protein 21/22-like isoform X2
TrEMBLA0A0A0LDG61e-152A0A0A0LDG6_CUCSA; Uncharacterized protein
STRINGXP_004150776.11e-152(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.19e-48NAC domain containing protein 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]