PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.041590.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 163aa    MW: 17972 Da    PI: 6.8831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.041590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-16452255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r ++  g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  Cucsa.041590.1  4 HYKGIR-CR-GGKWVSEIREPRK---TNRIWLGTYPTPEMAAAAYDVAALALKG 52
                    69***9.55.7*********854...49***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-15462No hitNo description
SuperFamilySSF541712.81E-18462IPR016177DNA-binding domain
SMARTSM003802.2E-27466IPR001471AP2/ERF domain
PROSITE profilePS5103219.467460IPR001471AP2/ERF domain
PfamPF008471.3E-9452IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-26461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
RHDHYKGIRC RGGKWVSEIR EPRKTNRIWL GTYPTPEMAA AAYDVAALAL KGCNAVLNFP  60
NSVAFYPVPA STSPTDIRIA AAAAAASKKV DDQGENSYHN SHYQSPPTNE FVDEEALFGM  120
PNLLHDMAEG MLLSPPRMNS SPSRHDYYSW NSSGDGNLWS YH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-132621274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448976.11e-100PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ901e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S3BKD71e-98A0A1S3BKD7_CUCME; ethylene-responsive transcription factor ERF026-like
STRINGXP_004171678.11e-119(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-45ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]