PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.041650.1
Common NameCsa_3G043940
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 201aa    MW: 22385.2 Da    PI: 9.7002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.041650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-051738223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC+ C++ F++   L  H+r+H
  Cucsa.041650.1 17 KCKVCNREFNSIKALYGHMRSH 38
                    8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-6738IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.2241638IPR007087Zinc finger, C2H2
SMARTSM003550.00981638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801638IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-81638No hitNo description
PfamPF139124.3E-91740IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-8131158No hitNo description
PfamPF139124.8E-8135160IPR007087Zinc finger, C2H2
SMARTSM003552.7136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKSDLEGHEE EKPTKCKCKV CNREFNSIKA LYGHMRSHPD RSWKGIQPPI TIASSSSSSS  60
SSPLPSWSFT AKRGCKGIGC ISTAAVAAPS SSSSRSSSLE TEAKLESRFS DPDVVEDQRQ  120
VKKMKKINEI ELNKVYKCNS CEKEYVSHQA LGGHKSRHRK SKILLRTSSN VTNPTHQERK  180
ILNFDLNELP TMEDDNNKRS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449183.12e-95PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133
TrEMBLA0A0A0L2N11e-145A0A0A0L2N1_CUCSA; Uncharacterized protein
STRINGXP_008449183.18e-95(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2448733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-11C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]