PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.042780.1
Common NameCsa_3G073910
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 125aa    MW: 14442.6 Da    PI: 4.7027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.042780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.4e-1215105183
                     EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                     f+k+lt+ dv+ + grl l k+f++ +       +++ e ++ ++++d +gr++++ ++ + ++  yvltk WkeF k n+L   g+f+   
  Cucsa.042780.1  15 FVKQLTKTDVTDNqGRLALHKEFVNLNldpmfndDEDLEDGISVIVYDIEGREYDMIFKLWASK-LYVLTKSWKEFYKTNDLTqPGEFISVW 105
                     89********99889*********888****999555568899***************989886.89***************8678887544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-1512108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1513111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-1413108No hitNo description
PfamPF023624.0E-815121IPR003340B3 DNA binding domain
SMARTSM010191.6E-615123IPR003340B3 DNA binding domain
PROSITE profilePS508639.03716123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAVIQNIIGE CSPPFVKQLT KTDVTDNQGR LALHKEFVNL NLDPMFNDDE DLEDGISVIV  60
YDIEGREYDM IFKLWASKLY VLTKSWKEFY KTNDLTQPGE FISVWMFRHV VTQKLCFAIM  120
RGQA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-108LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-108LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022145065.18e-42putative B3 domain-containing protein At4g03170
TrEMBLA0A0A0L7L04e-88A0A0A0L7L0_CUCSA; Uncharacterized protein
STRINGXP_008460492.16e-68(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.19e-24B3 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]