PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.043170.1

Common Name

Csa_6G504520, LOC101205136

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 148aa MW: 17030.9 Da PI: 5.0939

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.043170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.3	6.7e-13	28	87	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+q+NRe+ArrsR+RK++ ++ L++ v L + N ++ ++ ++ +l+ e+ Cucsa.043170.1 28 ERKRRRMQSNRESARRSRLRKQKHLDDLTNQVSRLRNHNNEMTTNMTVTMSLCISLEGEN 87 56789************************************9998888888887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-10	23	104	No hit	No description
SMART	SM00338	4.9E-13	25	89	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.128	27	73	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-11	27	86	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.09E-11	29	80	No hit	No description
CDD	cd14702	2.55E-15	30	80	No hit	No description
PROSITE pattern	PS00036	0	32	47	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MASSSGVSSG STNGGIRPSR SEDDLEEERK RRRMQSNRES ARRSRLRKQK HLDDLTNQVS 60 RLRNHNNEMT TNMTVTMSLC ISLEGENSIL EAQILELTNR LKSLNNIIKL IESMEVLEKT 120 FSCEIDDLNN DFEEEDYCNP WRYPFAN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	32	RKRRR
2	28	49	RKRRRMQSNRESARRSRLRKQK
3	41	47	RRSRLRK
4	41	48	RRSRLRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	4e-65	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	4e-65	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149987.1	1e-104	PREDICTED: ocs element-binding factor 1-like
TrEMBL	A0A0A0KMA4	1e-102	A0A0A0KMA4_CUCSA; Uncharacterized protein
STRING	XP_004149987.1	1e-103	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24697	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	3e-23	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Cucsa.043170.1
Entrez Gene	101205136

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]