PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.043400.1

Common Name

Csa_6G505230, LOC101206016

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

DBB

Protein Properties

Length: 169aa MW: 18863.5 Da PI: 7.0304

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.043400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++lfC ++ lC+ C ++ H Cucsa.043400.1 4 LCDSCESAPATLFCAADEAALCAICDTKVH 33 6**************************998 PP
2	zf-B_box	27.4	6.9e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Cucsa.043400.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkrmHK 92 789***************************99966666776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.58	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.14E-7	3	45	No hit	No description
SMART	SM00336	4.1E-8	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.4E-7	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.674	51	97	IPR000315	B-box-type zinc finger
SMART	SM00336	4.1E-9	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-6	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	7.25E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRILCDSCES APATLFCAAD EAALCAICDT KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD VIVHVGGKRM HKRYLRLRQR VEFPGDKQND VKDLNVKPTE 120 QVEKVKSQNE ERGENEKHEE LRVSGVTKDY SNGDGHSKRP NKVIDLNM*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	6e-83	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	6e-83	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134879.1	1e-123	PREDICTED: B-box zinc finger protein 18 isoform X1
Swissprot	Q9SJU5	3e-63	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	A0A0A0KJB1	1e-121	A0A0A0KJB1_CUCSA; Uncharacterized protein
STRING	XP_004158880.1	1e-122	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24698	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21320.1	3e-65	DBB family protein

Link Out ? help Back to Top
Phytozome	Cucsa.043400.1
Entrez Gene	101206016

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]