PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.044270.1

Common Name

Csa_6G509650, LOC101215892

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Nin-like

Protein Properties

Length: 200aa MW: 23184.6 Da PI: 10.3168

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.044270.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	2e-26	76	125	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l+dl+k+F pi++A+++L+v+lTvLKr+CR++GI+RWPhRkiks+ Cucsa.044270.1 76 ARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSI 125 78**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.905	62	145	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	78	125	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MKNGHLSCFP NGELCQLKNG KSHQPRNLPL LDQDLNFLPC SVSVSKESGN QMEESCASVF 60 FEQLEIKRRA TSEHIARITL SDLAKNFGVP ITEASRNLNV GLTVLKRKCR EFGIHRWPHR 120 KIKSIDGLIR DLQEEAKHRE EDHKALMAVT KRQMMLQNER ERIERTPFRE LENETKRFRQ 180 DVFRRKHKAR ALESQSPSV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	6e-99	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	6e-99	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134999.1	1e-138	PREDICTED: protein RKD5-like isoform X2
Swissprot	O81791	9e-45	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0A0KGY8	1e-137	A0A0A0KGY8_CUCSA; Uncharacterized protein
STRING	XP_004158891.1	1e-137	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-47	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.044270.1
Entrez Gene	101215892

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]