PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.045140.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 125aa MW: 14048.2 Da PI: 7.6314

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.045140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.6	8.8e-31	8	57	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l++m+v+gLt++hvkSHLQ Cucsa.045140.1 8 PRLRWTPDLHRCFVHAVERLGGEERATPKMVLQIMNVNGLTISHVKSHLQ 57 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-29	4	57	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-14	6	58	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-23	8	57	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	9	57	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
PYVRSKMPRL RWTPDLHRCF VHAVERLGGE ERATPKMVLQ IMNVNGLTIS HVKSHLQEED 60 YFGSSLKKMH QDLKKLDEET ESVKRVGGEE ITMSLCLSIR GLQPLMSKTG NSDVNDVSLE 120 LSLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	9	58	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	9	58	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	9	58	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	9	58	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	9	58	4	53	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-80	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-80	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134975.2	2e-38	PREDICTED: probable transcription factor KAN2 isoform X1
Refseq	XP_011658141.1	1e-38	PREDICTED: probable transcription factor KAN2 isoform X2
TrEMBL	A0A314Y753	2e-39	A0A314Y753_PRUYE; Putative transcription factor KAN4
TrEMBL	M5WLV5	1e-39	M5WLV5_PRUPE; Uncharacterized protein (Fragment)
STRING	EMJ14772	2e-40	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.045140.1