PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.045630.1

Common Name

Csa_6G516660, LOC105435955

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 355aa MW: 40103.2 Da PI: 7.7977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.045630.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	136	158	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg +F++++ L++H + H Cucsa.045630.1 136 TCQECGGVFKNSDALESHHLSkH 158 8*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.162	135	163	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	137	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.62E-13	161	353	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.8E-6	170	281	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MPEVWCTLKR SLSCTKSFLC DDVHEPEPIR DSNSKERTER DSSGCLSSKS NLRDIICGSK 60 RHSQKPSPRS SSRSLAMTEV LHTMIHEIES QIKRDNFFVP HEEKPRLKLH KISVTRNNHA 120 YSATSHTQFN DDHELTCQEC GGVFKNSDAL ESHHLSKHAV RELLQGDSSR KVIELICKRN 180 WHMSKSHHIE KVFKVHNSPR TQSLFEEYRE MVKTKARELE NENTRCLVDG NELLRFHGAT 240 IACSLSAANS SQILCNLVNC GVCQILRDGF NGAFTCATSG KAFEGIAINE EDVRLRRALV 300 VCRVIAGRIE EDEENENSGL DLSGGKRGRS SNREELYVFD SKAVLPCFVV TFNR*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MPEVWCTLKR SLSCTKSFLC DDVHEPEPIR DSNSKERTER DSSGCLSSKS NLRDIICGSK  60
RHSQKPSPRS SSRSLAMTEV LHTMIHEIES QIKRDNFFVP HEEKPRLKLH KISVTRNNHA  120
YSATSHTQFN DDHELTCQEC GGVFKNSDAL ESHHLSKHAV RELLQGDSSR KVIELICKRN  180
WHMSKSHHIE KVFKVHNSPR TQSLFEEYRE MVKTKARELE NENTRCLVDG NELLRFHGAT  240
IACSLSAANS SQILCNLVNC GVCQILRDGF NGAFTCATSG KAFEGIAINE EDVRLRRALV  300
VCRVIAGRIE EDEENENSGL DLSGGKRGRS SNREELYVFD SKAVLPCFVV TFNR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658172.1	0.0	PREDICTED: uncharacterized protein LOC105435955
TrEMBL	A0A0A0KHY3	0.0	A0A0A0KHY3_CUCSA; Uncharacterized protein
STRING	XP_004155663.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24442	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-59	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.045630.1
Entrez Gene	105435955

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]