PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.046660.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 286aa    MW: 30927.8 Da    PI: 6.3173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.046660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20120170255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Cucsa.046660.1 120 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFNTAEEAALAYDKAALRIRG 170
                     8********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-31119179No hitNo description
Gene3DG3DSA:3.30.730.105.5E-32119178IPR001471AP2/ERF domain
SMARTSM003803.7E-38120184IPR001471AP2/ERF domain
PROSITE profilePS5103223.723120178IPR001471AP2/ERF domain
PfamPF008471.1E-14120170IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23120180IPR016177DNA-binding domain
PRINTSPR003675.6E-11121132IPR001471AP2/ERF domain
PRINTSPR003675.6E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAIQQDQSEA ILENVWANYI GEKGLDGNGA TKSVSGSNKT WTELPSLCYR DGSMEVLERL  60
PSLGRWVSMG AEAWEELLDG IVPINNTEQS VHEDLKNTPT SHSGFDVNTR RAEKVVPTKH  120
YRGVRRRPWG KYAAEIRDSS RKGARVWLGT FNTAEEAALA YDKAALRIRG PKAHLNFPIE  180
TVTEAMGIHL STRNDHLNNL MPSSFQGHDS SSHGDSSITG ALQSDSVLEV AKEMVLELLP  240
QGSTLGFLFD GGEVVVVFAA AAAATTSGGK LRRALEPLIV KAAVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27119181466ATERF1
3gcc_A1e-27119181466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134940.21e-163PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A0A0KHS71e-162A0A0A0KHS7_CUCSA; Uncharacterized protein
STRINGXP_004134940.11e-163(Cucumis sativus)
STRINGXP_004155636.11e-163(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-34ERF family protein