PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.047280.1
Common NameCUM1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28921.9 Da    PI: 10.1144
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.047280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-313988150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cucsa.047280.1 39 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 88
                    79***********************************************8 PP
2K-box113.71.8e-371072034100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe+akL+ +i nLq+++R++lGe+L+sL+ k+L+ Le++Lek++++iRskKnell+++ie+++k+e +l+++n++Lr+k+
  Cucsa.047280.1 107 SNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQMLRAKI 201
                     3444499***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  Cucsa.047280.1 202 AE 203
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.1323191IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-423190IPR002100Transcription factor, MADS-box
CDDcd002652.45E-4532108No hitNo description
SuperFamilySSF554551.57E-3332106IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003387IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-333353IPR002100Transcription factor, MADS-box
PfamPF003199.5E-274087IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-335368IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-336889IPR002100Transcription factor, MADS-box
PfamPF014865.5E-28114201IPR002487Transcription factor, K-box
PROSITE profilePS5129714.98117207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MIKEEGKGKL QIKGMFQNQE EKMSDSPQRK MGRGKIEIKR IENTTNRQVT FCKRRNGLLK  60
KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKATIDRYK KASSDSSNTG STSEANTQFY  120
QQEAAKLRVQ IGNLQNSNRN MLGESLSSLT AKDLKGLETK LEKGISRIRS KKNELLFAEI  180
EYMRKREIDL HNNNQMLRAK IAESERNVNM MGGEFELMQS HPYDPRDFFQ VNGLQHNHQY  240
PRQDNMALQL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-2131103173Myocyte-specific enhancer factor 2B
1tqe_Q3e-2131103173Myocyte-specific enhancer factor 2B
1tqe_R3e-2131103173Myocyte-specific enhancer factor 2B
1tqe_S3e-2131103173Myocyte-specific enhancer factor 2B
6c9l_A3e-2131103173Myocyte-specific enhancer factor 2B
6c9l_B3e-2131103173Myocyte-specific enhancer factor 2B
6c9l_C3e-2131103173Myocyte-specific enhancer factor 2B
6c9l_D3e-2131103173Myocyte-specific enhancer factor 2B
6c9l_E3e-2131103173Myocyte-specific enhancer factor 2B
6c9l_F3e-2131103173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0354380.0AF035438.1 Cucumis sativus MADS box protein CUM1 (CUM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658265.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X1
SwissprotQ435851e-127AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLO649580.0O64958_CUCSA; CUM1
STRINGXP_008439700.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]
  2. Kater MM, et al.
    Multiple AGAMOUS homologs from cucumber and petunia differ in their ability to induce reproductive organ fate.
    Plant Cell, 1998. 10(2): p. 171-82
    [PMID:9490741]
  3. Perl-Treves R,Kahana A,Rosenman N,Xiang Y,Silberstein L
    Expression of multiple AGAMOUS-like genes in male and female flowers of cucumber (Cucumis sativus L.).
    Plant Cell Physiol., 1998. 39(7): p. 701-10
    [PMID:9729894]