PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.047600.1

Common Name

Csa_6G522745, LOC101215731

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

M-type_MADS

Protein Properties

Length: 291aa MW: 32120.7 Da PI: 7.6222

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.047600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.5	8.3e-19	26	74	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i n+ r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + + Cucsa.047600.1 26 KKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74 6789999*************************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.3E-29	18	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.306	18	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.49E-31	19	87	No hit	No description
SuperFamily	SSF55455	3.14E-25	19	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-19	20	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.6E-23	27	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-19	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-19	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDSSAPNAPV AGNKKQTKGR QKIEMKKIVN EDDRLITFSK RRSGIYKKAS ELATLCGAEV 60 GVVVFSPAGK PFSFAHPCIE TIANKFLNGN KNNKGNNDDN NNNGDSSSSN NNNNNSNNNN 120 NSNAAHPLVE AHRRVRINEL NQQHNQLLSQ LDAEKEKGKA LEKLKRVRGN GRGWWETPTE 180 ELGIEELQEV DASFGEIYSN VCHQLKQRGV IGCCSYNNYN NNMNNSSMGF PLTNDQLGEE 240 TIPFNILAGN VPPPLFPLPP PPPYLPPPPQ FDFGEQQQHP HPHPPPHPHP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658286.1	0.0	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A0A0KNT7	0.0	A0A0A0KNT7_CUCSA; Uncharacterized protein
STRING	XP_004162618.1	1e-142	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-26	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Cucsa.047600.1
Entrez Gene	101215731

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]