PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.047990.2
Common NameCsa_6G524670
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 906aa    MW: 100559 Da    PI: 6.4776
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.047990.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Cucsa.047990.2 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  Cucsa.047990.2 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp119.33.1e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k
  Cucsa.047990.2 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-22126227No hitNo description
SMARTSM010191.4E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576127229IPR003340B3 DNA binding domain
PfamPF023622.7E-22127228IPR003340B3 DNA binding domain
PfamPF065072.2E-34253336IPR010525Auxin response factor
PROSITE profilePS5174521.563771855IPR000270PB1 domain
SuperFamilySSF542771.37E-5785846No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MRLSTAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAISTNRE  60
VDAHIPSYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLTAQEQKEP YLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG FPSFHGLKED DLGLNSQLMW LRGDGLDRGI QPLNFPGIGV  420
APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQT QNLPNRPANF  480
MPPQMLQQPQ PQPQPPQTFL QGDENQHLSH SQAQSQPTAV LQQEIKHQTF NNHPQQQQQQ  540
QQQQQQQQQP QQQVFDHHQI PSPMSTMSQF SSASQSQAQS LQTIPPLCRQ QSFSDSNPNH  600
VTSPIISPLH SLLGGSFSQD ESSQMLNLPR TNPMIHSSTW PSKRAAIDPL LSSGNSQFVL  660
SQGENIGTTP ANISQNAFSL PPFPGRECSL DQGNVDPQSN LLFGVNIEPS SLLMQNGMPN  720
LRGICSDSDS TAIPFSSNYV NTAGTNFSAN PTGTGTPSNC NEDSGFLQSP ENTGQVYKSG  780
SFGRSLDISK FSSYHQLRSE LAHMFGLEGE LEDPLRSGWQ LVFVDRENDV LLLGDDPWPE  840
FVNSVWCIKI LSPQEVQDMG KRGLELLNSV PIQRLSNGSC DNYANRQESS RNMNSGITSV  900
GSLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611535745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1126730.0AB112673.1 Cucumis sativus CsARF3 mRNA for auxin response factor 3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292624.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0A0KI770.0A0A0A0KI77_CUCSA; Auxin response factor
STRINGXP_004166469.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]