PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.048230.4

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 125aa MW: 13898 Da PI: 10.4683

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.048230.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1.1e-32	22	78	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF Cucsa.048230.4 22 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 78 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.2E-35	20	81	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.843	21	81	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.8E-28	23	78	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.6E-24	24	46	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	26	46	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.6E-24	55	78	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MVHLQLMGIQ QAGVPLPTDA VEEPVFVNAK QYHGILRRRQ SRAKAESENK ALKSRKPYLH 60 ESRHLHALRR ARGCGGRFLK SNKNENHQNE VASAHLDNCK EIEVSIPASV VLALLHPWSI 120 LAAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	21	93	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	7e-85	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	7e-85	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022926733.1	4e-76	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_022926735.1	2e-76	nuclear transcription factor Y subunit A-7-like isoform X3
Refseq	XP_023518238.1	2e-76	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	2e-48	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0A0KIV0	2e-61	A0A0A0KIV0_CUCSA; Uncharacterized protein
STRING	XP_004134622.1	3e-62	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	7e-51	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Cucsa.048230.4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]