PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.048980.1
Common NameCsa_6G538700, LOC105436048
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 148aa    MW: 16977.7 Da    PI: 10.4809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.048980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-13659148
                     TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++ k+  +       +W++++++ g+ R++k+c++rw +yl
   Cucsa.048980.1  6 RGLWSPEEDEKLVKCMKRILSSdgaqaaCWSRVPKMAGLERCGKSCRLRWINYL 59
                     788**************998888*****************************97 PP
2Myb_DNA-binding53.17.4e-1765107145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++eE+  ++d+++ lG++ W+ Ia++++ gRt++++k++w+
   Cucsa.048980.1  65 RGCFSAEEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEIKNFWN 107
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.866159IPR017930Myb domain
SuperFamilySSF466899.73E-254106IPR009057Homeodomain-like
SMARTSM007173.4E-8561IPR001005SANT/Myb domain
PfamPF002497.4E-12659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-19766IPR009057Homeodomain-like
CDDcd001671.51E-5959No hitNo description
PROSITE profilePS5129425.37560114IPR017930Myb domain
SMARTSM007171.7E-1564112IPR001005SANT/Myb domain
PfamPF002492.5E-1565108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2567115IPR009057Homeodomain-like
CDDcd001673.14E-1168107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MKKVKRGLWS PEEDEKLVKC MKRILSSDGA QAACWSRVPK MAGLERCGKS CRLRWINYLR  60
PDLKRGCFSA EEERTIIDVH RILGNRWAQI AKHLPGRTDN EIKNFWNSSI KKKLIAQGLD  120
PTTHNLLPAS TTNTIYNHHQ SIIISQSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2961147108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-154LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-154LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658528.11e-108PREDICTED: transcription repressor MYB6-like
SwissprotP200272e-56MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A0A0KPD61e-107A0A0A0KPD6_CUCSA; Uncharacterized protein
STRINGXP_008439425.11e-100(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-68myb domain protein 67
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]