PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.049870.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 407aa MW: 45131.2 Da PI: 8.2609

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.049870.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	342	361	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF r++ +++H++++ Cucsa.049870.1 342 CSLCGKSF-RPEKMHSHMKSC 361 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.8E-34	16	253	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MEANNNNRAG GEIRKVHIIY FLSRMGHVEQ PHLIRVHHLA GGSAGVYLRD VKRWLGELRG 60 KEMAEAFSWS YKRKYKTGYV WQDLVDDDLI TPISDNEYVL QGSQIIFPST LFDTKTSLFR 120 EELEVSEDFS SKVQKANAEQ SPPCDSERST VTDDGDSMKV EEETAKNLET NQKQGVEEEE 180 VQDIEGVKTQ YSSSSLYAKL ANNKKEKDKD KDLMGKEGGP TATSTVSSSA QPAFTKSKSY 240 SSGASHVFRQ LITCGNGAED TNDTVLVKNR SQPKNDAVIC RDEVLGGSAR VIGNSWDFGN 300 LEIRRQTSRK SVDDLRKKRP KENGNGKVNA TATYKPMAGP NCSLCGKSFR PEKMHSHMKS 360 CRGMKCLTSK NNNNNNNNNT ATSDKSTLSK STTSDNDLVS TYMLTN*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MEANNNNRAG GEIRKVHIIY FLSRMGHVEQ PHLIRVHHLA GGSAGVYLRD VKRWLGELRG  60
KEMAEAFSWS YKRKYKTGYV WQDLVDDDLI TPISDNEYVL QGSQIIFPST LFDTKTSLFR  120
EELEVSEDFS SKVQKANAEQ SPPCDSERST VTDDGDSMKV EEETAKNLET NQKQGVEEEE  180
VQDIEGVKTQ YSSSSLYAKL ANNKKEKDKD KDLMGKEGGP TATSTVSSSA QPAFTKSKSY  240
SSGASHVFRQ LITCGNGAED TNDTVLVKNR SQPKNDAVIC RDEVLGGSAR VIGNSWDFGN  300
LEIRRQTSRK SVDDLRKKRP KENGNGKVNA TATYKPMAGP NCSLCGKSFR PEKMHSHMKS  360
CRGMKCLTSK NNNNNNNNNT ATSDKSTLSK STTSDNDLVS TYMLTN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681804	1e-123	LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBank	LN713255	1e-123	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136105.2	0.0	PREDICTED: uncharacterized protein LOC101207468
TrEMBL	A0A1S3CE85	0.0	A0A1S3CE85_CUCME; uncharacterized protein LOC103499876 isoform X2
STRING	XP_008461226.1	0.0	(Cucumis melo)
STRING	XP_004136105.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20

Link Out ? help Back to Top
Phytozome	Cucsa.049870.1