PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050910.1
Common NameCsa_1G560720, LOC101216939
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 300aa    MW: 34328.3 Da    PI: 6.8111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065157181123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C+k ++  ++++ H+++  H
  Cucsa.050910.1 157 FYCDLCNKQYKLAMEFEAHLSSydH 181
                     78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004439.6E-1760105IPR000467G-patch domain
PROSITE profilePS5017416.80262107IPR000467G-patch domain
PfamPF015858.4E-1563103IPR000467G-patch domain
SuperFamilySSF576675.7E-5138191No hitNo description
PfamPF121711.6E-5157184IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280159181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDYRGFSSRL ETSNPSKGYA REQESLGDDF IDDFRLPINH KPTENVDLDN VEQASLDTQL  60
TSSNVGYRLL QKMGWKGKGL GKNEQGIIEP IKSGMRDPKL GIGKQEEDDF FTAEENIQRK  120
KLDVEVEETE EHAKKREVLA EREEKIQTEV KEIRKVFYCD LCNKQYKLAM EFEAHLSSYD  180
HNHRKRFKEM REMHGSSSRD DRNKREQQRE EREMAKFAQI ADARKKQQQL LEQQARAAEA  240
PVSTELRNAT SVADQDQRKT LKFGFSSKGG TSKNIFGGAK KKPKVAPVAS VFGNDSDDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818063e-89LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132563e-89LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135573.10.0PREDICTED: G patch domain-containing protein 8
RefseqXP_011659455.10.0PREDICTED: G patch domain-containing protein 8
TrEMBLA0A0A0LW540.0A0A0A0LW54_CUCSA; Uncharacterized protein
STRINGXP_004163770.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]